PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00030245-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 328aa    MW: 36588 Da    PI: 8.278
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00030245-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-091271532246
                         T...-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  22 g...tWktIartmgkgRtlkqcksrwqk 46 
                         +   +W++Ia++++ gRt++++k++w++
  WALNUT_00030245-RA 127 PgvyRWSKIAQYLP-GRTDNEIKNYWRT 153
                         16668*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.160.20.104.9E-890129IPR012334Pectin lyase fold
SuperFamilySSF511262.83E-791131IPR011050Pectin lyase fold/virulence factor
PROSITE profilePS512949.002115159IPR017930Myb domain
CDDcd001671.71E-7123153No hitNo description
SuperFamilySSF466891.17E-7126163IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-11130154IPR009057Homeodomain-like
PfamPF002492.0E-7131153IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MASISHLQLS LLLLLPSLTF TITLASSSWS SAKEINYNKW ISWNIKNYQQ RATLKGTESI  60
VLEARGRGRG AARKVVLLDA KLRKAEMNKV SLSVSQNGSG GDFKTIGDAL NSIPLPNTNR  120
VILLIKPGVY RWSKIAQYLP GRTDNEIKNY WRTRVQKQAK QLKCDVNSKQ FRDTMRYVWM  180
PRLMERIRAE SESNSDEPTT GYSTESTTDH FPNNSTGPNS SYQVATSRSD PAVEPYFMHA  240
ISSGSPAASS EAQVSSISEL SECYNIPGGN YTDNSLNGSG LCQKGLEMDI PSLEHSNGWC  300
GGGGDTLDSL WNDENMWFLR QQLYDYEV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267917.18e-56R2R3 transcription factor MYB108-like protein 2
TrEMBLD7U2M66e-59D7U2M6_VITVI; Putative uncharacterized protein
STRINGVIT_07s0005g01950.t012e-58(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-36myb domain protein 78